scSemiProfiler.utils.celltype_proportion¶

scSemiProfiler.utils.celltype_proportion(adata, totaltypes)[source]¶

Compute the cell type proportion in a dataset

Parameters

adata (anndata._core.anndata.AnnData) – The dataset to investigate
totaltypes (typing.Union[numpy.array, list]) – The total cell types to consider

Return type

numpy.array

Returns

prop – Cell type proportion

Example

>>> real_prop = celltype_proportion(real_rep,totaltypes)