scSemiProfiler.utils.composition_by_group

scSemiProfiler.utils.composition_by_group(adata, colormap=None, groupby=None, title='Cell type composition', save=None)

Visualizing the cell type composition in each group.

Parameters

• adata (anndata._core.anndata.AnnData) – The dataset to investigate

• colormap (typing.Union[str, list, None]) – The colormap for visualization

• groupby (typing.Optional[str]) – The key in .obs specifying groups.

• title (str) – Plot title

• save – Path within the ‘figures’ folder to save the plot

Return type

None

Returns

None

Example

>>> groupby = 'states_collection_sum'
>>> composition_by_group(
>>>     adata = gtdata,
>>>     groupby = groupby,
>>>     title = 'Ground truth'
>>>     )